PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015844t1
Common NameTCM_015844
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 475aa    MW: 53309.5 Da    PI: 9.6254
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015844t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.81.4e-2323111186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+k+e+laLiea++e++ +lrrg+lk+p+W++vs ++   ++ g ++s++qC++k+e+l+kry+++k+++ k+  + ss++ +f  l+
  Thecc1EG015844t1  23 CWSKEETLALIEAYKEKWFALRRGNLKAPDWDAVSTAVtsaADPGTTKSSVQCRHKIEKLRKRYRAEKQRSLKNPGKFSSSWDLFPLLD 111
                       7*************************************999999*****************************99999*******9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0022085IPR001005SANT/Myb domain
PfamPF138379.4E-2222113No hitNo description
PROSITE profilePS500906.1562483IPR017877Myb-like domain
SMARTSM005950.005631118IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSTPTSPPQS SSATATRRVP PPCWSKEETL ALIEAYKEKW FALRRGNLKA PDWDAVSTAV  60
TSAADPGTTK SSVQCRHKIE KLRKRYRAEK QRSLKNPGKF SSSWDLFPLL DSMSFASTLV  120
AGSDDQDHTV DSKVSVFDGF GLKLKNREWI DGNSGSNIGF DHDLRGGYGS NFDFDHKFEG  180
RYGVKLQGNR DFVAKGIKFK SNGRLGDGYG SMVDFDHNFV EGVDNVGEFP LKTLGDRNLV  240
NPEFKPKNFG SPNLNYDYYN DLEEYGIDEG MGFLGKVSSA WDSVPQGFHP KKCGRVDRTT  300
EVDCRGLNGF ASSSRPGLGR KNGGVRVKKG VDPVEEMVSS IKLLAEGFVR MEKMKMEMVK  360
EIEKMRMEME MKHNEMILES QQKIVDAFAK ALLEKKKRKK KPSALSPNVN GNAVEEWQSD  420
DMIKKKKDDG NSKLGYFLSS NFNLRVVSKT PSVTVTQLWQ PYIYFYANFL MIKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393401EKKKRKKKP
2394400KKKRKKK
3395399KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039670.10.0Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative
TrEMBLA0A061G3R00.0A0A061G3R0_THECC; Alcohol dehydrogenase transcription factor Myb/SANT family protein, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-30Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]